rs6406168 SNP Detail

Summary

• ID
  rs6406168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:72837057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCATGGG GTTCATTCTT
  CATCCTCAAT GGTCAGGAGC CACTTCCAAC AGGTGCCCAG GGAGGACAAA GGATCCAGGT
  ATGCTTGTCT AGTTCAGGTT TGAGGTTATC AGTTATTTCT TTGTAGCTTC ATAGCTTGAA
  ATCTAAAGAG AAGGCTTAGA TAGGTTTCTA CTGTACCTGC TTGTATTCTA ATGCCAATTA
  Y
  GTTCCCCAAA AACATGTTTG AAGGAGAACA CACGTAGCTT CTGGGTACCT GCCCCCAGTT
  GATGCTGATT GGTAAGTAAA GATGCCAACA GCTAATAGCT GAGCAGGGCG GACAGAGGAG
  GGATTTTAGG ATCCCCAAGC TTGGGGCCAG GAAAAGAAGA GGGAGAAGGA GATCCGCCAA
  GGCCAGAGAG CATGGAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8812376	WI_WGS_7_62634139	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6406168					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:72837057 () rs orientation: forward

Symbol	Name	Function Class
Gm20083	predicted gene, 20083	within coordinates
Gm28746	predicted gene 28746	1916 bp upstream
Tssr67187	transcription start site region 67187	1534 bp downstream
Tssr67188	transcription start site region 67188	1500 bp downstream