rs6406234 SNP Detail

Summary

• ID
  rs6406234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45453656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTAAGTA CAGGGATATA
  TATGACGGGG CATACGATAG AGCTGTGTCC TTGTTCTTAG AAATGTACTC AGCAAGAGAA
  ACAAGGCATT GTTAAGTCAC AATAAAGGAA AAAAAAACCT ACAATTTTGC TTTCGAACTT
  GAGTTTTATT ACTGTTCAAA ATTTAATTTG TAAGCAGGAT AGTTAAGGCA TTTGTTTATA
  R
  AAAAGTACAT CTGTTTTAGC TTGGTGGTGA TGAATTTAGG AATAACTGAA ATTCTCTAAT
  CTGCTTTACT GGGGTGTGTT AGAACCGAGG GAGGATGCTC TTATACAACT TTGGAGGGAA
  GAACGTGAGG GCGCGTGAAA GCCCACAAAG TATTTCCACA AATTGCTCAG TCTAACCTAC
  AGATCACCAC ATAGATGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8812443	WI_WGS_10_45695633	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6406234					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45453656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1519	CpG island 1519	83 bp proximal
Gm3805	predicted gene 3805	within coordinates
Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	269 bp upstream
Rr224766	regulatory region 224766	within coordinates
Rr224767	regulatory region 224767	1944 bp proximal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	269 bp proximal
Tssr93194	transcription start site region 93194	251 bp upstream
Tssr93195	transcription start site region 93195	356 bp upstream
Tssr97528	transcription start site region 97528	540 bp downstream
Tssr97529	transcription start site region 97529	561 bp downstream