rs6406251 SNP Detail

Summary

• ID
  rs6406251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45453669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATATATAT GACGGGGCAT
  ACGATAGAGC TGTGTCCTTG TTCTTAGAAA TGTACTCAGC AAGAGAAACA AGGCATTGTT
  AAGTCACAAT AAAGGAAAAA AAAACCTACA ATTTTGCTTT CGAACTTGAG TTTTATTACT
  GTTCAAAATT TAATTTGTAA GCAGGATAGT TAAGGCATTT GTTTATAGAA AAGTACATCT
  R
  TTTTAGCTTG GTGGTGATGA ATTTAGGAAT AACTGAAATT CTCTAATCTG CTTTACTGGG
  GTGTGTTAGA ACCGAGGGAG GATGCTCTTA TACAACTTTG GAGGGAAGAA CGTGAGGGCG
  CGTGAAAGCC CACAAAGTAT TTCCACAAAT TGCTCAGTCT AACCTACAGA TCACCACATA
  GATGCCATAG AGGCGTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8812460	WI_WGS_10_45695646	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6406251					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45453669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1519	CpG island 1519	70 bp proximal
Gm3805	predicted gene 3805	within coordinates
Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	256 bp upstream
Rr224766	regulatory region 224766	within coordinates
Rr224767	regulatory region 224767	1931 bp proximal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	256 bp proximal
Tssr93194	transcription start site region 93194	238 bp upstream
Tssr93195	transcription start site region 93195	343 bp upstream
Tssr97528	transcription start site region 97528	527 bp downstream
Tssr97529	transcription start site region 97529	548 bp downstream