rs6406666 SNP Detail

Summary

• ID
  rs6406666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132064827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCAGTG CTAACCTTGG
  TGTGTTCCTA CCCTCTGAGA TGGGAAAGTG CCAGCTCAGC AGTGAATGCC TAGAGAGCGA
  AGGTGAAGGG TCCAGGGAAG AGGAGAGAAA GGGTTACTGG GGGACACACA GCCCAGGGAA
  AGAAATGTGA CTTATTCCCA AAGGAGTGGA GCTAAGCAGG TAGACCTGGA ACTCAGCCAG
  Y
  CAGTCCCTTG TGGACAGCAG AGCAGAACAA GGACTGCAAA TAATTAAGTC CCAGGAAAGG
  GTCCTCTTAC CCCAGGCGCA GGGTCCTGCC AAAGTCCTGC AGCCTACCTG ACCCACCAGT
  ACCCAGAAGG CTTAGTACCT GGCACAGACT GCTGGCCTTT CCTGACATGT TTCCATTCAG
  CCCACCCACC CACCCATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8812876	WI_WGS_1_132983234	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6406666					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132064827 () rs orientation: forward

Symbol	Name	Function Class
Cdk18	cyclin dependent kinase 18	within coordinates
Cpgi722	CpG island 722	1662 bp proximal
Rr28498	regulatory region 28498	373 bp proximal