rs6406950 SNP Detail

Summary

• ID
  rs6406950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93884087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTACTGAG ATACCCGCCC
  AGAGACTTGG ACTTTAGACG GTGGCGCTGG GGACCCTAGT TCTGGGGAAG TGTGGTGTTA
  ACCAATGTTT GATGTTTGGA GAAGGACTTA TGTGGAGCCT GTCTGCTGGG CCTGGAGCTA
  CCCCATACCC ACTTCAATAG CGTTTGCCAT CTCCTCCCTA AAGTCAAAAC GGCCTCCACT
  S
  CGAAAATCCA GTCGCAAGAG TTCAGATGCG CTTTCCTGTT ACAAACTGGG AAATTCGTTG
  AGAAGTTTCA ATTCTTGTTG CTTGCCGGGT TTCTCTCACC TCCACTTAGC CATGTTTCTA
  TGATCTGGGT AATCCCTTTC AAGCCGGGGA GGAATTCTCG GGAGTCCATA ATTGAGGGTC
  GGGAATCTGG GGCGTGGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8813163	WI_WGS_16_94809940	WI	MOUSE	f	SNP					G	C
ss60509722	NES16529307	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G			G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6406950					SNP	G	G	G	G	G	C	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60509722	NES16529307	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93884087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	103 bp proximal
Gm31175	predicted gene, 31175	within coordinates
Gm49620	predicted gene, 49620	within coordinates
Gm60844	predicted gene, 60844	within coordinates
Rr520039	regulatory region 520039	509 bp distal
Rr520040	regulatory region 520040	within coordinates
Rr520041	regulatory region 520041	628 bp proximal
Rr520042	regulatory region 520042	1213 bp proximal
Rr520043	regulatory region 520043	1714 bp proximal
Rr520044	regulatory region 520044	1864 bp proximal
Sim2	single-minded family bHLH transcription factor 2	1876 bp upstream
Tssr139539	transcription start site region 139539	1689 bp upstream
Tssr139540	transcription start site region 139540	1998 bp upstream