rs6406993 SNP Detail

Summary

• ID
  rs6406993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93884107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACTTGG ACTTTAGACG
  GTGGCGCTGG GGACCCTAGT TCTGGGGAAG TGTGGTGTTA ACCAATGTTT GATGTTTGGA
  GAAGGACTTA TGTGGAGCCT GTCTGCTGGG CCTGGAGCTA CCCCATACCC ACTTCAATAG
  CGTTTGCCAT CTCCTCCCTA AAGTCAAAAC GGCCTCCACT GCGAAAATCC AGTCGCAAGA
  R
  TTCAGATGCG CTTTCCTGTT ACAAACTGGG AAATTCGTTG AGAAGTTTCA ATTCTTGTTG
  CTTGCCGGGT TTCTCTCACC TCCACTTAGC CATGTTTCTA TGATCTGGGT AATCCCTTTC
  AAGCCGGGGA GGAATTCTCG GGAGTCCATA ATTGAGGGTC GGGAATCTGG GGCGTGGGAG
  AAGCGTTAAA CCCTATGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8813206	WI_WGS_16_94809960	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6406993					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93884107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	83 bp proximal
Gm31175	predicted gene, 31175	within coordinates
Gm49620	predicted gene, 49620	within coordinates
Gm60844	predicted gene, 60844	within coordinates
Rr520039	regulatory region 520039	529 bp distal
Rr520040	regulatory region 520040	within coordinates
Rr520041	regulatory region 520041	608 bp proximal
Rr520042	regulatory region 520042	1193 bp proximal
Rr520043	regulatory region 520043	1694 bp proximal
Rr520044	regulatory region 520044	1844 bp proximal
Sim2	single-minded family bHLH transcription factor 2	1856 bp upstream
Tssr139539	transcription start site region 139539	1669 bp upstream
Tssr139540	transcription start site region 139540	1978 bp upstream