rs6407209 SNP Detail

Summary

• ID
  rs6407209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40126031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGAAGGA TTTTTGTGGG
  TCACTTCAGG CTCGGTTAGT TAAGCTAAAG GAAGAACAGG TTGGTGGATC CCATGTAAGA
  GCCTTACTCT TTGTGAGCTG GTCTGAAGGT CAGAGTCAAG AGATTTGAAG CAGTGTCACA
  TAGGCTGTTG GCCTTAGAGA GAGGCTTCAG GCTTGAGACT CAGCAGTCTT TGACATCTGG
  Y
  CTTCAGCTGA TAAAATAGCA GGGAGTTCAG TACTGCAATC ATAACCATCA TGTAAACTTG
  GGAAAGAATC AGAGGCTCAA AAGGGAACAT AGCCAGGTTG AGCCTTGGCT ATAGCCAGGA
  AGGACTCGGA GCAGAGAGAC CCTCTAAGAT GAGCCTAGAC ATTGGACCAC AGCAGGCGAG
  GCTAAACTGC TGAGTATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8813422	WI_WGS_1_40600463	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6407209					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40126031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi194	CpG island 194	807 bp distal
Gm16894	predicted gene, 16894	1020 bp upstream
Gm37347	predicted gene, 37347	1640 bp upstream
Il1r2	interleukin 1 receptor, type II	within coordinates
Rr26842	regulatory region 26842	536 bp proximal
Rr29353	regulatory region 29353	430 bp distal
Rr396010	regulatory region 396010	835 bp downstream
Tssr6414	transcription start site region 6414	1643 bp downstream
Tssr6415	transcription start site region 6415	777 bp downstream
Tssr11414	transcription start site region 11414	1009 bp upstream