rs6408006 SNP Detail

Summary

• ID
  rs6408006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72213830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT TTTAGATAGG GTTGTTCAGG
  Y
  GGACTTTGAG CTTGCTATGT AGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8814220	WI_WGS_9_72943552	WI	MOUSE	f	SNP	C							T
ss46402073	mCV22918131	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss61419726	NES16806330	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C	C	C	C		C	C	C	C		T
ss136620198	ENSMUSSNP4589324	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss323002134	CHEV_9_72154355	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6408006					SNP	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61419726	NES16806330	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72213830 () rs orientation: forward

Symbol	Name	Function Class
Tssr85977	transcription start site region 85977	672 bp downstream
Tssr85978	transcription start site region 85978	121 bp upstream
Zfp280d	zinc finger protein 280D	within coordinates