rs6408157 SNP Detail

Summary

• ID
  rs6408157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9617293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTTGTGTA TTTATCAAAG CGGGGAGGGC
  GGGGGAAAAT TATATCTACC TGTGATTTGC AAGTATTGTA AATGGATGCA GGTACCTGGT
  GTTGCTTTTA ACTTTTACTG TCGGTAGAGG TTGCATGTGA AGCCAGTAAC CTGGGCACCA
  R
  TATGGAGTGT GCTTGAGAAA AACAAAGTAG TTACAGTGGT TCTAAAAAAG ACCCCTTGTT
  TTAGGAAAAC TTTGGCCCTA ACTATAATAT TAAAAGTATA GTGCTTTTTG GTGTTGGTTC
  AGGTGGTGCA TTTGGCCAAT GGATTGCTTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss8814371	WI_WGS_1_9596559	WI	MOUSE	f	SNP	G		A
ss148565815	ENSMUSSNP5837420	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G		G
ss319630699	CHEV_1_9537149	CHEVERUD	SCREENING_POP	f	SNP					A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs6408157					SNP	G	A	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9617293 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	880 bp upstream
Cpgi23	CpG island 23	829 bp distal
Rr395961	regulatory region 395961	1672 bp downstream
Rr407596	regulatory region 407596	1870 bp distal
Rr407597	regulatory region 407597	1650 bp distal
Rr407598	regulatory region 407598	1714 bp distal
Rr407599	regulatory region 407599	1486 bp distal
Rr407600	regulatory region 407600	521 bp distal
Rr407601	regulatory region 407601	908 bp distal
Rr407602	regulatory region 407602	453 bp proximal
Rr407603	regulatory region 407603	891 bp proximal
Rrs1	ribosome biogenesis regulator 1	mRNA-UTR
Tssr5894	transcription start site region 5894	1680 bp downstream
Tssr5895	transcription start site region 5895	1589 bp downstream
Tssr5896	transcription start site region 5896	1573 bp downstream
Tssr5897	transcription start site region 5897	1080 bp downstream
Tssr5898	transcription start site region 5898	981 bp upstream
Tssr5899	transcription start site region 5899	1046 bp upstream