rs6408376 SNP Detail

Summary

• ID
  rs6408376
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132065156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTAGTAC CTGGCACAGA
  CTGCTGGCCT TTCCTGACAT GTTTCCATTC AGCCCACCCA CCCACCCATT TCTTATAGAG
  AACTCTCCTC TCCAACCAAA AGGGGGGAAA CTTCTAGCCA AGGCCTTGGC TTGCCGGGGT
  TTCATGGTCT TCCGCCCCAG AGTCAGCCAC GGGGTATGAC TAGGACATCG CCTTTCCCAG
  K
  CCTCACCACC ACATGATCAC CTCGGCTTCC ATGTGTTATA CAATAACAGC CCTCCCTACC
  AGGAGCCCCT CTCCAAACAG AACACTGAGC AAGTTCGAGA GTTTGCTGGG AGCCACAAAA
  TCAATAGGAG GATTCTAGAA ATGGCTTAGA TTTGACCATC CTTTCTCATC TTCAGGTCCC
  AAACTCAGAG AAGGAAAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8814590	WI_WGS_1_132983563	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6408376					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132065156 () rs orientation: forward

Symbol	Name	Function Class
Cdk18	cyclin dependent kinase 18	within coordinates
Cpgi722	CpG island 722	1333 bp proximal
Rr28498	regulatory region 28498	44 bp proximal