rs6408614 SNP Detail

Summary

• ID
  rs6408614
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106147603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGCGGT AATTGCATCC
  TTGTAGTGGA TTCAGAAATG AAGGCTTAGA ACCAAGAACT AAGCCTCCGA AGTTCAAACA
  CACAGACCTC GCCCATCGAG ATACCAGTTT CTGAGGAAAA GGGAATGGTA TTTTCCTGAC
  CTTGTTTCTT AAGCTATATG GTAGAGTGCC TCGAAAATAC TTTGGCTTTA CCCTTTAGTA
  S
  TTTATGCCTT TTCTTTTTCT TTTCTTTTCT TTTCTTCTTT TTTTTTTTTA ACACTTACAC
  TTGTCTTCAG ATGGAACTGG AAGAGGGGAA GGCAGGCAGT GGACTCCGTC AATATTATCT
  GTCCAAGATT GAAGAACTCC AGGTGAGTAC AGACAGCAAA GGGAGCTAGT GGAGGACGGG
  AGCTGGTAGG TGCAGATTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8814829	WI_WGS_11_107044225	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6408614					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106147603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	397 bp distal
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	698 bp upstream
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	within coordinates
Rr403040	regulatory region 403040	517 bp downstream
Tssr105507	transcription start site region 105507	642 bp downstream
Tssr105508	transcription start site region 105508	605 bp downstream
Tssr105509	transcription start site region 105509	588 bp downstream
Tssr111306	transcription start site region 111306	940 bp upstream
Tssr111307	transcription start site region 111307	674 bp upstream