rs6408627 SNP Detail

Summary

• ID
  rs6408627
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106147611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CGGTGGGTAT
  ATGGCCCCTT GAGACTCCTA AAAGTCCTCG AAGGTAGGCG GTAATTGCAT CCTTGTAGTG
  GATTCAGAAA TGAAGGCTTA GAACCAAGAA CTAAGCCTCC GAAGTTCAAA CACACAGACC
  TCGCCCATCG AGATACCAGT TTCTGAGGAA AAGGGAATGG TATTTTCCTG ACCTTGTTTC
  TTAAGCTATA TGGTAGAGTG CCTCGAAAAT ACTTTGGCTT TACCCTTTAG TANTTTATGC
  M
  ttttcttttt cttttctttt cttttcttct tttttttttt TAACACTTAC ACTTGTCTTC
  AGATGGAACT GGAAGAGGGG AAGGCAGGCA GTGGACTCCG TCAATATTAT CTGTCCAAGA
  TTGAAGAACT CCAGGTGAGT ACAGACAGCA AAGGGAGCTA GTGGAGGACG GGAGCTGGTA
  GGTGCAGATT TCTCTGTGTC CTTTTTCCAC TGGGAGTGCA GCAAAGAGTT CTTTTCCAAT
  GTTGTTCGTT                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8814842	WI_WGS_11_107044233	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6408627					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106147611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	405 bp distal
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	706 bp upstream
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	within coordinates
Rr403040	regulatory region 403040	525 bp downstream
Tssr105507	transcription start site region 105507	650 bp downstream
Tssr105508	transcription start site region 105508	613 bp downstream
Tssr105509	transcription start site region 105509	596 bp downstream
Tssr111306	transcription start site region 111306	948 bp upstream
Tssr111307	transcription start site region 111307	682 bp upstream