rs6408888 SNP Detail

Summary

• ID
  rs6408888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31083460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCACAC ACCTCCATCC
  GCTCTTGGTG GAAAAACTGG CAGTTATCTG GAACTAGCAG GACATCACTT ACAAATTCAC
  CCACTGGGAG AAACAAAAAG CCTTTGTCAG AAGCAAATCT GGTTGTGCTT CAGGGTGAAC
  ACAGCCAGCC TTCAGTTCCG ATCCTCCGAT TAATGTTTAC AGGTCGCTGC ACATCCAGGC
  R
  TACATACGCA CGCGTGGACA CTGAAGGACT CCCCTATCCC ACCTGCGGCT TGGGCAGTAA
  CATTTCCTGG CTACAATCCT GTGCAGGAAC TACTGCAATA CATTTCTGGG AGATGTGACA
  GGATCCCTGT CCATGACCAC CTCAAGTAGA CACACCTCAT GACCAGTGTG CTGAACCTTT
  CTTCACAAAA CTATTAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8815103	WI_WGS_9_31299115	WI	MOUSE	f	SNP			A	G
ss136240470	ENSMUSSNP4805887	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6408888					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31083460 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Rr675960	regulatory region 675960	1688 bp proximal
Tssr88639	transcription start site region 88639	1640 bp upstream
Tssr88640	transcription start site region 88640	1625 bp upstream
Tssr88641	transcription start site region 88641	1605 bp upstream
Tssr88642	transcription start site region 88642	1582 bp upstream
Tssr88643	transcription start site region 88643	1542 bp upstream