rs6409060 SNP Detail

Summary

• ID
  rs6409060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106051840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACAGTGA CTTCACTAGC
  CCCGCTGTGT TTTCTCCTTT CTTCTCAGAT GCTAAGTACA TACGCAGTAC TCACCCAGTA
  TTTACTGGAC TAAAGATAGT CCTTTGCCTC TACTTTCACC AAAGGTTTGC TCAGGGAAGG
  GGTGGGGGAT AAAGGAGATT ACTATTCAGA GGAAAATGAC TAGGACCAGA GAGGAGAGAC
  R
  TGAGGAAGAG TATGGATGGG ACTGGGATGA CTAAGCCCCC ATCCCTAGGG GGCTAAGAGG
  GAAGACTGGA CTAAGAGAGT GGCTGACCTA TCTTCTGAAT GATCAACCCT GGGAGCCATG
  CTAAAGGACA ACATGTCTTA ATGGAAAGGA TCATACATAA TTCATTATCC TGAGAAATGC
  CTTTCTAGCA CTAGAGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8815275	WI_WGS_8_105169687	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6409060					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106051840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20926	CpG island 20926	638 bp proximal
Fbxl9	F-box and leucine-rich repeat protein 9	within coordinates
Rr185875	regulatory region 185875	within coordinates
Rr401090	regulatory region 401090	920 bp upstream
Tmem208	transmembrane protein 208	1146 bp upstream
Tssr79133	transcription start site region 79133	1758 bp downstream
Tssr79134	transcription start site region 79134	1146 bp upstream
Tssr79135	transcription start site region 79135	1211 bp upstream
Tssr82642	transcription start site region 82642	1872 bp upstream
Tssr82643	transcription start site region 82643	1044 bp downstream
Tssr82644	transcription start site region 82644	1073 bp downstream