rs6409422 SNP Detail

Summary

• ID
  rs6409422
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:71543547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATTACA ACAGGTTTCC
  AATGCACTTG CCCTCTAGCA CCAACCTTTC TGTGCCCTGT CTAGAAAATA AGAATAGTAA
  GGTCAGTGCT GCAAAGACAG CTGCATTTCC TGATGCACAC CTTCTGTGCG TTCTTTCTTG
  AGTAATTTCT GCTTTTTAAA TTCGTTTACT TTTAGAGAGT ATTAAGTTGT TGAGGGGAGC
  W
  GTTTAACTTA AGAATACAGC CTGGGACCCA GTAATTTTCT CCAGACTGCA TATTACCATG
  CCTGTTTCCT GGAATGCAGG ATCAAAGCAC TTCCAAATGT CAGACTTTTC TTAACTGTCC
  TGTTAGTTCA TAATGGCAAT TTAAGTTAGT ACTTATAACT TTTTCTTCTA TAATTACAGT
  CAAAAAGACC CCAGTTGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8815638	WI_WGS_17_70374858	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6409422					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71543547 () rs orientation: forward

Symbol	Name	Function Class
Lpin2	lipin 2	within coordinates
Rr530453	regulatory region 530453	103 bp distal
Rr530454	regulatory region 530454	383 bp proximal
Tssr145747	transcription start site region 145747	1945 bp upstream