rs6409598 SNP Detail

Summary

• ID
  rs6409598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:3855850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACCTGGC ACATTCTGTT
  CCCAACCCTG AACTTTTCAG CCAGGGGATG AGCTGCCCTT CCTCAGAGCC TCTTCCCTAT
  AGAATCCAAA CATTATGGTC TCCTCCTCTC TCTTCATCTC TTCTCTCTCC TGCATGCACC
  CTTTCTTCCC CTTGTCCCTA CCTTTCCTCC CATGTCTACA ATCGCCCCTG TCCACAATTC
  W
  TGGAGCCAGT GAACTCGATT GAGACAGCTT CCCAACAAAC CTGCCTTTAA AATAATGTAA
  TCTAGCTTGA ACTAGCTCAT TTTACAGTTG GAGAAGTAAC CTATCAGCAG TTAGTGAAAG
  ACTGTAAAAA GATTGAGTGT ATGTAGGTCG GTGTGTAAGT ACAGGTACTT GTGGCAGCTA
  GGTGTACGGG CTTCCCTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8815814	WI_WGS_18_3711524	WI	MOUSE	f	SNP			A	T
ss146572941	ENSMUSSNP6077301	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6409598					SNP	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:3855850 () rs orientation: forward

Symbol	Name	Function Class
Rpl7a-ps6	ribosomal protein L7A, pseudogene 6	1919 bp downstream
Rr353994	regulatory region 353994	1650 bp distal
Rr393188	regulatory region 393188	1075 bp upstream