rs6409906 SNP Detail

Summary

• ID
  rs6409906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGCAAG GGAAGTCAAC
  ATACGAATAT TTCATTATTT GACATATCAT GAAAAAATTA AAAGAAACCA AAAAAAAAAA
  AAAAACCCTT AAAAACTTTA AAGGCCAAGG AACTCTTTGG GCTCTGTAGC AACACGCGAG
  GATGATGGTG GAAGGGTTTG GGGAATACTG ACTTCGAGGA GATTCTTTCA ATTTCTTTAG
  R
  AGTTCCATTT TCCACGTTGA TGTTATGGGC ATTTTCAAGA GTGGCCCTCC TAGCACAATA
  GAAACGTGAT CATTATGGTG AAATATTGCC ATAATTACGA GAAGCTGCGG TGGCGGTTAG
  GGACCAGCAG CACTTGCTTA AAGAGACGAC TAAAGGGAAG GATTGTTTTC CAACGTGTAG
  AGAGGGCAAG TTACAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8816122	WI_WGS_7_89655409	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6409906					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	73 bp proximal
Rr400465	regulatory region 400465	393 bp upstream
Rr652012	regulatory region 652012	454 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	624 bp upstream
Tssr68078	transcription start site region 68078	688 bp upstream
Tssr73711	transcription start site region 73711	132 bp upstream
Tssr73712	transcription start site region 73712	437 bp downstream
Tssr73713	transcription start site region 73713	475 bp downstream
Tssr73714	transcription start site region 73714	557 bp downstream
Xrra1	X-ray radiation resistance associated 1	783 bp upstream