rs6410037 SNP Detail

Summary

• ID
  rs6410037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTAAAAA CTTTAAAGGC
  CAAGGAACTC TTTGGGCTCT GTAGCAACAC GCGAGGATGA TGGTGGAAGG GTTTGGGGAA
  TACTGACTTC GAGGAGATTC TTTCAATTTC TTTAGAAGTT CCATTTTCCA CGTTGATGTT
  ATGGGCATTT TCAAGAGTGG CCCTCCTAGC ACAATAGAAA CGTGATCATT ATGGTGAAAT
  R
  TTGCCATAAT TACGAGAAGC TGCGGTGGCG GTTAGGGACC AGCAGCACTT GCTTAAAGAG
  ACGACTAAAG GGAAGGATTG TTTTCCAACG TGTAGAGAGG GCAAGTTACA AGTGTGCGTT
  CGTGTGCTAC GGAGGAGCGC TCAAGGAGCC ACAGAAAATA AGGGGGTGGG GATGGGAAGC
  TGGGCTCACC AGCTCCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8816254	WI_WGS_7_89655494	WI	MOUSE	f	SNP					A	G
ss51920258	NES14942872	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A			A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6410037					SNP	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920258	NES14942872	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	within coordinates
Rr400465	regulatory region 400465	308 bp upstream
Rr652012	regulatory region 652012	369 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	539 bp upstream
Tssr68078	transcription start site region 68078	603 bp upstream
Tssr73711	transcription start site region 73711	217 bp upstream
Tssr73712	transcription start site region 73712	352 bp downstream
Tssr73713	transcription start site region 73713	390 bp downstream
Tssr73714	transcription start site region 73714	472 bp downstream
Xrra1	X-ray radiation resistance associated 1	698 bp upstream