rs6410096 SNP Detail

Summary

• ID
  rs6410096
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106052008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAAAATG ACTAGGACCA
  GAGAGGAGAG ACATGAGGAA GAGTATGGAT GGGACTGGGA TGACTAAGCC CCCATCCCTA
  GGGGGCTAAG AGGGAAGACT GGACTAAGAG AGTGGCTGAC CTATCTTCTG AATGATCAAC
  CCTGGGAGCC ATGCTAAAGG ACAACATGTC TTAATGGAAA GGATCATACA TAATTCATTA
  W
  CCTGAGAAAT GCCTTTCTAG CACTAGAGGA GTAGAGATAG GGGTGGAGTG GTCATCCCAT
  GAGAGCACCC CAAAAGATTA CTACTACTGG TAACCCATGG GGTTTACAGG GATGAATAGA
  TACCTTCTGG GGCCAAAAGG GAATAGGATG TCACGACTCA AGGGAAAAGG CCTGACTTCC
  TAGGGCAACG AGAGGGGGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8816313	WI_WGS_8_105169855	WI	MOUSE	f	SNP							T		A
ss47495933	NES11194371	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6410096					SNP	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47495933	NES11194371	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106052008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20926	CpG island 20926	470 bp proximal
Fbxl9	F-box and leucine-rich repeat protein 9	within coordinates
Rr185875	regulatory region 185875	within coordinates
Rr401090	regulatory region 401090	752 bp upstream
Tmem208	transmembrane protein 208	978 bp upstream
Tssr79133	transcription start site region 79133	1926 bp downstream
Tssr79134	transcription start site region 79134	978 bp upstream
Tssr79135	transcription start site region 79135	1043 bp upstream
Tssr82643	transcription start site region 82643	876 bp downstream
Tssr82644	transcription start site region 82644	905 bp downstream