rs6410188 SNP Detail

Summary

• ID
  rs6410188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13259603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTGTT TTACATTCAT
  TTGTGTTATT ATTTATTGTG TGCCTGTGTG CACATATACA TGCACAGGTG CACATGCATG
  TTCTTGCACA CACACATGTG GAAGTCAGAG GGCAGCTCCC TGGAGACAGT TCTCTTATCC
  AACAATCTCT TCCACAGTGT GGGGTTCAGG TATTGAACTC AGATAGTCAG ACTACATAGC
  Y
  CTGGCTGGTT TCACACTTCT GGTGATTCTC CGGCTTCAGA CTCTTGGATG CTGGGATTAC
  AAGCATGCAC CTATAGCAAG CCATGCCCTC CCTGTGCATT AGCATCTGGT ACATAATCTT
  GGGGACTGGT GTGTCGTAAA CACACACGTC AAGCACAGCG GGCAGCTTGG CCATTTGTCA
  AGTAGCAGCC TGGTGTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8816405	WI_WGS_8_13197411	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6410188					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13259603 () rs orientation: forward

Symbol	Name	Function Class
Gm63815	predicted gene, 63815	830 bp downstream
Rr381722	regulatory region 381722	within coordinates
Rr659882	regulatory region 659882	279 bp distal
Rr659883	regulatory region 659883	940 bp distal
Rr659884	regulatory region 659884	820 bp distal
Rr659885	regulatory region 659885	within coordinates