rs6410314 SNP Detail

Summary

• ID
  rs6410314
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13259681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTGCA CACACACATG
  TGGAAGTCAG AGGGCAGCTC CCTGGAGACA GTTCTCTTAT CCAACAATCT CTTCCACAGT
  GTGGGGTTCA GGTATTGAAC TCAGATAGTC AGACTACATA GCCCTGGCTG GTTTCACACT
  TCTGGTGATT CTCCGGCTTC AGACTCTTGG ATGCTGGGAT TACAAGCATG CACCTATAGC
  M
  AGCCATGCCC TCCCTGTGCA TTAGCATCTG GTACATAATC TTGGGGACTG GTGTGTCGTA
  AACACACACG TCAAGCACAG CGGGCAGCTT GGCCATTTGT CAAGTAGCAG CCTGGTGTCT
  TTGTGGCGTA GACTGGAGGT GGCACTGGGA AGCCAGGGAC TAACCCTGAA TGAAGCTGAC
  TTAATTAGGG TTCTTGTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8816531	WI_WGS_8_13197489	WI	MOUSE	f	SNP	A	C
ss322505112	CHEV_8_13209681	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6410314					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13259681 () rs orientation: forward

Symbol	Name	Function Class
Gm63815	predicted gene, 63815	752 bp downstream
Rr381722	regulatory region 381722	within coordinates
Rr659882	regulatory region 659882	357 bp distal
Rr659883	regulatory region 659883	1018 bp distal
Rr659884	regulatory region 659884	898 bp distal
Rr659885	regulatory region 659885	within coordinates