rs6410520 SNP Detail

Summary

• ID
  rs6410520
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATGATGG TGGAAGGGTT
  TGGGGAATAC TGACTTCGAG GAGATTCTTT CAATTTCTTT AGAAGTTCCA TTTTCCACGT
  TGATGTTATG GGCATTTTCA AGAGTGGCCC TCCTAGCACA ATAGAAACGT GATCATTATG
  GTGAAATATT GCCATAATTA CGAGAAGCTG CGGTGGCGGT TAGGGACCAG CAGCACTTGC
  K
  TAAAGAGACG ACTAAAGGGA AGGATTGTTT TCCAACGTGT AGAGAGGGCA AGTTACAAGT
  GTGCGTTCGT GTGCTACGGA GGAGCGCTCA AGGAGCCACA GAAAATAAGG GGGTGGGGAT
  GGGAAGCTGG GCTCACCAGC TCCTGGGCAT TCCCCGGGCT CTAGATTGTC CCCAGGACTA
  AGCTCCTCAC CTTATCCAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8816737	WI_WGS_7_89655547	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6410520					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	within coordinates
Rr400465	regulatory region 400465	255 bp upstream
Rr652012	regulatory region 652012	316 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	486 bp upstream
Tssr68078	transcription start site region 68078	550 bp upstream
Tssr73711	transcription start site region 73711	270 bp upstream
Tssr73712	transcription start site region 73712	299 bp downstream
Tssr73713	transcription start site region 73713	337 bp downstream
Tssr73714	transcription start site region 73714	419 bp downstream
Xrra1	X-ray radiation resistance associated 1	645 bp upstream