rs6410543 SNP Detail

Summary

• ID
  rs6410543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCA GCAGCACTTG CTTAAAGAGA
  Y
  GACTAAAGGG AAGGATTGTT TTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8816760	WI_WGS_7_89655556	WI	MOUSE	f	SNP				C	T
ss46085098	mCV24185519	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C		T
ss145517542	ENSMUSSNP5075405	ENSEMBL	ENSEMBL_Sanger	f	SNP			C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6410543					SNP	C	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	within coordinates
Rr400465	regulatory region 400465	246 bp upstream
Rr652012	regulatory region 652012	307 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	477 bp upstream
Tssr68078	transcription start site region 68078	541 bp upstream
Tssr73711	transcription start site region 73711	279 bp upstream
Tssr73712	transcription start site region 73712	290 bp downstream
Tssr73713	transcription start site region 73713	328 bp downstream
Tssr73714	transcription start site region 73714	410 bp downstream
Xrra1	X-ray radiation resistance associated 1	636 bp upstream