rs6410698 SNP Detail

Summary

• ID
  rs6410698
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80075352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGCCAC GGGGCTAAGA
  ATGGGAGATG CCCAGATGGG GACATTGTAG TGGCCCATGA TGATTAGAGA GGCAGAGGAA
  AGCCAGTGAG CATGGCTGTG GGTTTGCAGA AGAAGAAGAG AGATCGAGTA TCCTGCCAGA
  CATGGTGTGA GGCTACGTGG AGAGGGAGTC TTAGGGACTT GTAAAACAGG CCCTTGTCAA
  R
  GCTCCTAGGT GTCATCCCAT TTAGTTCTTG TGAAGAGAGG GGGTGGCTGG TTTGACTCTG
  TAGGTAGGAT CTCTGAGGTT ACCTGCCTAG GATCACTTGG TGGTGGGGAC AGAGAAAGGA
  CAGACTTTGA GTCTAAGTCC CTTCAGCTCA GAGTTGAGCT TCTCCCCAAC ACTACTGCAG
  GGGACCAGAA GATTTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8816915	WI_WGS_15_80922603	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6410698					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80075352 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505906	regulatory region 505906	1681 bp distal
Rr505907	regulatory region 505907	746 bp distal
Rr505908	regulatory region 505908	233 bp proximal
Rr505909	regulatory region 505909	1361 bp proximal
Rr505910	regulatory region 505910	1862 bp proximal
Tssr4660	transcription start site region 4660	1959 bp upstream
Tssr132183	transcription start site region 132183	1969 bp downstream
Tssr132184	transcription start site region 132184	1950 bp downstream
Tssr132185	transcription start site region 132185	694 bp upstream
Tssr132186	transcription start site region 132186	1011 bp upstream
Tssr132187	transcription start site region 132187	1849 bp upstream
Tssr132188	transcription start site region 132188	1902 bp upstream
Tssr132189	transcription start site region 132189	1922 bp upstream