rs6411218 SNP Detail

Summary

• ID
  rs6411218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGAAATCACC
  AGCCACGAAA GTGAGCGCCG CAAGACGGTG GGGGAAACGC GACTGAGAGC CCCGGCCACC
  CCCGCTACTG AGACAGCGGG TTGAGGCGGC CTGGCACCCC GCGCGCCTTG CACTGTCCGC
  ACCAGAGTCT GCAGTCCCGA NGCGGCTTCA CCTCAGCGGG GGAGACATCA GCCCCAAGGG
  AGCTCCACAC AGTTTccgcg gccccgcggc gccggccgga gcgcgcggcc TCCTGATTGG
  Y
  CGGCGACTCT CTCGGTTTGT CTCGCGCGGA CTGCTACGGC CAATCGGGTT CTCGGCAGCC
  AAGTGAGGCA CTTCGCTGGA GTGGTGGCGC AGCGCTCTCT GCCCGCGGTA GGTGTGTGGC
  TGCGGCGAGC CTTTTCCGGC TCTGGGAGTG TGTGTGTGGA AGGAGAGTCC TCGGGGTGAC
  AGGAGTGTTG GGAGTGAAGG GGCGACTTAA CTAGCAGGGG ATTCTTCTCG CCCGCCCGGA
  GTCTCCTCCC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8817435	WI_WGS_14_50543493	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6411218					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678360 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	40 bp upstream
Cpgi6560	CpG island 6560	within coordinates
Gm45935	predicted gene, 45935	31 bp upstream
Rr404137	regulatory region 404137	within coordinates
Rr493049	regulatory region 493049	47 bp distal
Rr493050	regulatory region 493050	within coordinates
Rr493051	regulatory region 493051	81 bp proximal
Setdb2	SET domain, bifurcated 2	31 bp upstream
Tssr125903	transcription start site region 125903	329 bp downstream
Tssr125904	transcription start site region 125904	36 bp upstream
Tssr129008	transcription start site region 129008	24 bp upstream
Tssr129009	transcription start site region 129009	177 bp downstream
Tssr129010	transcription start site region 129010	192 bp downstream
Tssr129011	transcription start site region 129011	391 bp downstream
Tssr129012	transcription start site region 129012	398 bp downstream
Tssr129013	transcription start site region 129013	400 bp downstream