rs6411261 SNP Detail

Summary

• ID
  rs6411261
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156047098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA CAGACTGCAG GAGCCGGGGC
  S
  CGGCAGGAGC TCAAGAAGTC TCGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8817478	WI_WGS_4_151421560	WI	MOUSE	f	SNP	C	G
ss321444098	CHEV_4_155336750	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6411261					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156047098 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	within coordinates
Cpgi15495	CpG island 15495	within coordinates
Gm42365	predicted gene, 42365	103 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606619	regulatory region 606619	313 bp distal
Rr606620	regulatory region 606620	472 bp proximal
Rr606621	regulatory region 606621	780 bp proximal
Tssr40744	transcription start site region 40744	304 bp downstream
Tssr40745	transcription start site region 40745	249 bp downstream
Tssr40746	transcription start site region 40746	221 bp downstream
Tssr40747	transcription start site region 40747	65 bp downstream