rs6411781 SNP Detail

Summary

• ID
  rs6411781
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60322407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCATAAT ATCATCAGGA
  CTCTTCCTGA CTGTTTATTC TAATTTTATC TGATTATTTT TTAATTTTTA TTTTATTTAC
  ATTTTTCTTT TCTTTTTACC TTACAGGTCC TTTCCATAGA TATAACTTCC TGTTTAGTGT
  TTTTATGGCA TTCTGGAATA TGAAAATGAA CTGGGTCTCT GTGTCTGTAT GTGTTTCTTG
  W
  TCCTTCTCAT AAGATTCTCC TTTACAGGGC TAATATCCAA TATATGTAAA GAACTCAAGA
  AGTTGGACTC CAGAAAACCA AACAAACCTA TTTTAAAATG GGGTACAGAG CTAAACAAAG
  AATTCTCAAC CGAGGAATTC CAAATGGCTG AGAAGCACCT AAAGAAATGT TTAACATCCT
  TAATCATCAG TGAAATGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8817998	WI_WGS_3_60999871	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6411781					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60322407 () rs orientation: forward

Symbol	Name	Function Class
Gm54175	predicted gene, 54175	within coordinates
Rr577390	regulatory region 577390	880 bp distal