rs6411832 SNP Detail

Summary

• ID
  rs6411832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80075557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGTGTCA TCCCATTTAG
  TTCTTGTGAA GAGAGGGGGT GGCTGGTTTG ACTCTGTAGG TAGGATCTCT GAGGTTACCT
  GCCTAGGATC ACTTGGTGGT GGGGACAGAG AAAGGACAGA CTTTGAGTCT AAGTCCCTTC
  AGCTCAGAGT TGAGCTTCTC CCCAACACTA CTGCAGGGGA CCAGAAGATT TCTTTTGTCC
  Y
  ATCCTCTCTG GCCTTGGCCT TAGTAAACTG AGAGGCACCC ACTAACTACC TAACTTCAAC
  CTCATGGTGC CCCCCTGACA CTGTGCTGTG GGGGTTGGGG GTGTTACTGG TACAAGGAGC
  ACCCCGCTCT TCATTCCATA GCTGCGGAAG TCGATTCCTG ACAGAGCTGG CCTCGGTGTG
  ACTCTAGGAT TTGCTTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8818049	WI_WGS_15_80922808	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6411832					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80075557 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505906	regulatory region 505906	1886 bp distal
Rr505907	regulatory region 505907	951 bp distal
Rr505908	regulatory region 505908	28 bp proximal
Rr505909	regulatory region 505909	1156 bp proximal
Rr505910	regulatory region 505910	1657 bp proximal
Tssr4660	transcription start site region 4660	1754 bp upstream
Tssr132185	transcription start site region 132185	489 bp upstream
Tssr132186	transcription start site region 132186	806 bp upstream
Tssr132187	transcription start site region 132187	1644 bp upstream
Tssr132188	transcription start site region 132188	1697 bp upstream
Tssr132189	transcription start site region 132189	1717 bp upstream