rs6411949 SNP Detail

Summary

• ID
  rs6411949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57388764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGATGA GCAAGGTCCC
  CATGCCTGAG CCGGTGCCAC CTCCGAGCGA GTGGGTGAGC TGGAAGCCCT GGAGACAGTC
  GCAGCTTTCC GCCTCTTTGC GCACCACGTC CAGGACGGCA TCCACTAACT CCGCGCCCTC
  GGTGTAGTGA CCCTTGGCCC AGTTGTTGCC TGCTCCGGAT TGACCTGGGG AAGCGACAGC
  R
  TTGAATTCGC AGGCATGGAG AAGGGGTGGA CTCTCCAACC CATCCATCTG CACTGCACCC
  TGGTATCTGA ATCATTAGAC TAGAAAATGA TAAGAGTACC TGGCTGGGCT CCATGGATGG
  AGCACTGCCT AGCACGGAGG AGGCCTAGAG TTCTAACCTG GCCACAACAG AAACCAGATG
  TGTTGGCCAC ACTCTTACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8818166	WI_WGS_17_56142941	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6411949					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57388764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	within coordinates
Gm56907	predicted gene, 56907	within coordinates
Rr529268	regulatory region 529268	1481 bp distal
Tssr5182	transcription start site region 5182	1520 bp downstream
Tssr145372	transcription start site region 145372	1479 bp downstream
Tssr145373	transcription start site region 145373	1159 bp downstream
Tssr145374	transcription start site region 145374	1043 bp downstream
Tssr148882	transcription start site region 148882	1349 bp upstream
Tssr148883	transcription start site region 148883	1256 bp upstream
Tssr148884	transcription start site region 148884	1187 bp upstream
Tssr148885	transcription start site region 148885	1139 bp upstream
Tssr148886	transcription start site region 148886	1118 bp upstream
Tssr148887	transcription start site region 148887	1102 bp upstream
Tssr148888	transcription start site region 148888	1059 bp upstream
Tssr148889	transcription start site region 148889	1035 bp upstream
Tssr148890	transcription start site region 148890	934 bp upstream
Tssr148891	transcription start site region 148891	814 bp upstream
Tssr148892	transcription start site region 148892	795 bp upstream
Tssr148893	transcription start site region 148893	582 bp upstream
Tssr148894	transcription start site region 148894	510 bp upstream
Tssr148895	transcription start site region 148895	106 bp upstream
Tssr148896	transcription start site region 148896	39 bp upstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates