rs6411966 SNP Detail

Summary

• ID
  rs6411966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57388773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAGGTCC CCATGCCTGA
  GCCGGTGCCA CCTCCGAGCG AGTGGGTGAG CTGGAAGCCC TGGAGACAGT CGCAGCTTTC
  CGCCTCTTTG CGCACCACGT CCAGGACGGC ATCCACTAAC TCCGCGCCCT CGGTGTAGTG
  ACCCTTGGCC CAGTTGTTGC CTGCTCCGGA TTGACCTGGG GAAGCGACAG CGTTGAATTC
  R
  CAGGCATGGA GAAGGGGTGG ACTCTCCAAC CCATCCATCT GCACTGCACC CTGGTATCTG
  AATCATTAGA CTAGAAAATG ATAAGAGTAC CTGGCTGGGC TCCATGGATG GAGCACTGCC
  TAGCACGGAG GAGGCCTAGA GTTCTAACCT GGCCACAACA GAAACCAGAT GTGTTGGCCA
  CACTCTTACT GCAGTACTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8818183	WI_WGS_17_56142950	WI	MOUSE	f	SNP							G	A
ss62807924	NES17358197	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G			G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6411966					SNP	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62807924	NES17358197	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57388773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	within coordinates
Gm56907	predicted gene, 56907	within coordinates
Rr529268	regulatory region 529268	1490 bp distal
Tssr5182	transcription start site region 5182	1529 bp downstream
Tssr145372	transcription start site region 145372	1488 bp downstream
Tssr145373	transcription start site region 145373	1168 bp downstream
Tssr145374	transcription start site region 145374	1052 bp downstream
Tssr148882	transcription start site region 148882	1358 bp upstream
Tssr148883	transcription start site region 148883	1265 bp upstream
Tssr148884	transcription start site region 148884	1196 bp upstream
Tssr148885	transcription start site region 148885	1148 bp upstream
Tssr148886	transcription start site region 148886	1127 bp upstream
Tssr148887	transcription start site region 148887	1111 bp upstream
Tssr148888	transcription start site region 148888	1068 bp upstream
Tssr148889	transcription start site region 148889	1044 bp upstream
Tssr148890	transcription start site region 148890	943 bp upstream
Tssr148891	transcription start site region 148891	823 bp upstream
Tssr148892	transcription start site region 148892	804 bp upstream
Tssr148893	transcription start site region 148893	591 bp upstream
Tssr148894	transcription start site region 148894	519 bp upstream
Tssr148895	transcription start site region 148895	115 bp upstream
Tssr148896	transcription start site region 148896	48 bp upstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates