rs6412198 SNP Detail

Summary

• ID
  rs6412198
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117040959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAATTAG CATGAATCAC
  CATACCTGAT TTTTGTCATT ATTTATAATG TCTTTTTGTT TCGTAGTACT AGGTATTAAC
  TCCAGGACTT TGTGCATGTG CCACTACTGT CCGGCTTCTA GGGGAACGTT CTTACACTGA
  ACCACATCAT TACTGCCCCA GTATGCAGAC CTATGCAGAC CAAGAACCCC CACCGCCCCG
  S
  GGAGGATATG TATAGTGTAA ATGGTGTCTA GCCCTTGGTC TATCCAACCT TGACAAGCCT
  GAAGACCTGA GTTTGATCTT CTGGACCTAC ATGGTAGGAG AATGAACTCC CCAAAGCCTC
  CACAAATGTG CCATGGCATG CACCACATAC ACACACACAC ATACTAAATA AACAAGTTAA
  ATGTAGTTAC ATTAAAAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8818415	WI_WGS_4_114946024	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6412198					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117040959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14654	CpG island 14654	835 bp distal
Kif2c	kinesin family member 2C	1138 bp upstream
Rr398412	regulatory region 398412	955 bp downstream
Rr598074	regulatory region 598074	1134 bp distal
Rr598075	regulatory region 598075	633 bp distal
Tssr42965	transcription start site region 42965	1159 bp upstream
Tssr42966	transcription start site region 42966	1126 bp upstream
Tssr42967	transcription start site region 42967	811 bp upstream