rs6412246 SNP Detail

Summary

• ID
  rs6412246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:140413793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AAAGTGCCAG
  AGCCGTGCAG TGGGGTGCTC TGGTGAGCAT TCAAGTTTTT CTCTGATGAT TTCTTTTCTT
  ttattattat tattattgtt gttgttgttg ttTTtttgtt tttgtttttg tagacagggt
  ttctctgtgt agccctggct gtcctggaac tcactttgta gaccaggctg gcctcaaact
  cagagatccg cctgcctctg cctccngagt gctgggatta aaggtgtgcg caccactgcc
  Y
  ggcCGATGAT TTTTTTTGTG CAGTGACTCA GGGNCTCTGC CATTGAACTG CATCCTCCCC
  ACCCCCAAAC TTGAGCGATT GGAGCACTAA CTCCCTTACT GTGGTTTCAC CTTCCTGGGC
  TGCAGTGACA CAGAGTCCCA CAGCAGGAAG ATTGTCCCTT GGCTCTTCCA GGAGAGAGAC
  CACACAGACA GAACTCACTA CAGNGTGTGT TCATATGGTT GTGTTCTGTT GTCTTTGTAT
  ACTTCTCATG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8818463	WI_WGS_5_139325882	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6412246					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:140413793 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr24	DNA Segment, Chr 5, Derry C. Roopenian 24	810 bp distal
Eif3b	eukaryotic translation initiation factor 3, subunit B	within coordinates
Mir7038	microRNA 7038	629 bp downstream
Rr127695	regulatory region 127695	1793 bp distal