rs6412326 SNP Detail

Summary

• ID
  rs6412326
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117041028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTATTAA CTCCAGGACT
  TTGTGCATGT GCCACTACTG TCCGGCTTCT AGGGGAACGT TCTTACACTG AACCACATCA
  TTACTGCCCC AGTATGCAGA CCTATGCAGA CCAAGAACCC CCACCGCCCC GCGGAGGATA
  TGTATAGTGT AAATGGTGTC TAGCCCTTGG TCTATCCAAC CTTGACAAGC CTGAAGACCT
  R
  AGTTTGATCT TCTGGACCTA CATGGTAGGA GAATGAACTC CCCAAAGCCT CCACAAATGT
  GCCATGGCAT GCACCACATA CACACACACA CATACTAAAT AAACAAGTTA AATGTAGTTA
  CATTAAAAAC AAGAATAGTG CCAGGCTTGG TGGCACATGC CTTTAATCCC AGCACTCGGG
  AGGCAGAGGC AGGCAGATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8818543	WI_WGS_4_114946093	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6412326					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117041028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14654	CpG island 14654	904 bp distal
Kif2c	kinesin family member 2C	1207 bp upstream
Rr398412	regulatory region 398412	1024 bp downstream
Rr598074	regulatory region 598074	1203 bp distal
Rr598075	regulatory region 598075	702 bp distal
Tssr42965	transcription start site region 42965	1228 bp upstream
Tssr42966	transcription start site region 42966	1195 bp upstream
Tssr42967	transcription start site region 42967	880 bp upstream