rs6412551 SNP Detail

Summary

• ID
  rs6412551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80075722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTACTGCA GGGGACCAGA
  AGATTTCTTT TGTCCCATCC TCTCTGGCCT TGGCCTTAGT AAACTGAGAG GCACCCACTA
  ACTACCTAAC TTCAACCTCA TGGTGCCCCC CTGACACTGT GCTGTGGGGG TTGGGGGTGT
  TACTGGTACA AGGAGCACCC CGCTCTTCAT TCCATAGCTG CGGAAGTCGA TTCCTGACAG
  R
  GCTGGCCTCG GTGTGACTCT AGGATTTGCT TGGCTTTTCT GTTTCCTACT GCTAATGAGA
  TAGGACCACC TTTCCGGGTG TGGGCAGCTT GAGCCTCGTA GGTAGCAGGG AGTTGAGGGC
  CAGGGGCTCC TGTCAGATTC GTCCTCCCAC TGGCCTCTGG GTTCCTGAAG ATGCCTGTGA
  ACAGTTCAAG TGGGTGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8818768	WI_WGS_15_80922973	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6412551					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80075722 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505907	regulatory region 505907	1116 bp distal
Rr505908	regulatory region 505908	within coordinates
Rr505909	regulatory region 505909	991 bp proximal
Rr505910	regulatory region 505910	1492 bp proximal
Tssr4660	transcription start site region 4660	1589 bp upstream
Tssr132185	transcription start site region 132185	324 bp upstream
Tssr132186	transcription start site region 132186	641 bp upstream
Tssr132187	transcription start site region 132187	1479 bp upstream
Tssr132188	transcription start site region 132188	1532 bp upstream
Tssr132189	transcription start site region 132189	1552 bp upstream