rs6412734 SNP Detail

Summary

• ID
  rs6412734
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65202009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC CCGGTGGGCT ATCGCTGGCC
  Y
  GTGAGCTCTC GGGCCTTCGG AGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8818953	WI_WGS_9_65877199	WI	MOUSE	f	SNP						T		C
ss47726010	NES11329057	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		T		T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6412734					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47726010	NES11329057	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65202009 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	within coordinates
Cpgi21943	CpG island 21943	within coordinates
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	447 bp downstream
Tssr85679	transcription start site region 85679	558 bp downstream
Tssr85680	transcription start site region 85680	523 bp downstream
Tssr85681	transcription start site region 85681	386 bp downstream
Tssr85682	transcription start site region 85682	352 bp downstream
Tssr85683	transcription start site region 85683	310 bp downstream
Tssr85684	transcription start site region 85684	290 bp downstream
Tssr85685	transcription start site region 85685	283 bp downstream
Tssr85686	transcription start site region 85686	151 bp downstream