rs6412832 SNP Detail

Summary

• ID
  rs6412832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:23448238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCCAAG CCCGGTTACG
  CCCCCAATAT GCCACACCTC TGGGCGCCGC CCTCTGCAGG CTTCTCCCCC ACCCCACCCC
  CGACTTCGCC CCGCCTCTCT GCCCTAAGAC CCCGCCCTAT GCCTCCTGGC GCTGTCTTCT
  GCTAGGCTCC TCCCCGACTT CGCCCCGCCC CCCGGTCCTA AGGCTCCGCC CTGGCCCTAG
  Y
  CCTCCGCTTT GTAACCCCTG GTTCGCCTTG TTCTTGCCGC TGGCTCCTGC TGCCCAGCGA
  GGCTTCTGGC CAGGGCTTTC TACGAACGAC CGAGACTCCG CCCAGGGCTC GTACCAGAGC
  GGGTTGTCCA TTTTCTGAGG CCCTTGGGAT GGGAGCTGCG CAGGTCCCTA AGCAGAGGCC
  CGCGAGGGTT TACTGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8819051	WI_WGS_11_23528319	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6412832					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:23448238 () rs orientation: forward

Symbol	Name	Function Class
1700030C12Rik	RIKEN cDNA 1700030C12 gene	within coordinates
Ahsa2	AHA1, activator of heat shock protein ATPase 2	208 bp upstream
Cpgi2649	CpG island 2649	within coordinates
Gm47279	predicted gene, 47279	399 bp upstream
Rr402454	regulatory region 402454	within coordinates
Rr443827	regulatory region 443827	491 bp distal
Rr443828	regulatory region 443828	within coordinates
Tssr100626	transcription start site region 100626	498 bp downstream
Tssr100627	transcription start site region 100627	449 bp downstream
Tssr100628	transcription start site region 100628	431 bp downstream
Tssr100629	transcription start site region 100629	406 bp downstream
Tssr100630	transcription start site region 100630	388 bp downstream
Tssr107128	transcription start site region 107128	276 bp upstream
Tssr107129	transcription start site region 107129	194 bp upstream
Tssr107130	transcription start site region 107130	177 bp upstream