rs6412889 SNP Detail

Summary

• ID
  rs6412889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:23448260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CCGCAGCCAG
  CTCCACCCCA CATCGACTCT GCCCCAAGCC CGGTTACGCC CCCAATATGC CACACCTCTG
  GGCGCCGCCC TCTGCAGGCT TCTCCCCCAC CCCACCCCCG ACTTCGCCCC GCCTCTCTGC
  CCTAAGACCC CGCCCTATGC CTCCTGGCGC TGTCTTCTGC TAGGCTCCTC CCCGACTTCG
  CCCCGCCCCC CGGTCCTAAG GCTCCGCCCT GGCCCTAGNC CTCCGCTTTG TAACCCCTGG
  Y
  TCGCCTTGTT CTNGCCGCTG GCTCCTGCTG CCCAGCGAGG CTTCTGGCCA GGGCTTTCTA
  CGAACGACCG AGACTCCGCC CAGGGCTCGT ACCAGAGCGG GTTGTCCATT TTCTGAGGCC
  CTTGGGATGG GAGCTGCGCA GGTCCCTAAG CAGAGGCCCG CGAGGGTTTA CTGAAAGAAT
  GCTTTTTTTT TTTCCATGCA GTGATCCTCT AGAGACAAAA GATCGTGCTT GCAAGTGCCT
  GGGATTGTGG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8819108	WI_WGS_11_23528341	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6412889					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:23448260 () rs orientation: forward

Symbol	Name	Function Class
1700030C12Rik	RIKEN cDNA 1700030C12 gene	within coordinates
Ahsa2	AHA1, activator of heat shock protein ATPase 2	230 bp upstream
Cpgi2649	CpG island 2649	within coordinates
Gm47279	predicted gene, 47279	421 bp upstream
Rr402454	regulatory region 402454	within coordinates
Rr443827	regulatory region 443827	513 bp distal
Rr443828	regulatory region 443828	within coordinates
Tssr100626	transcription start site region 100626	520 bp downstream
Tssr100627	transcription start site region 100627	471 bp downstream
Tssr100628	transcription start site region 100628	453 bp downstream
Tssr100629	transcription start site region 100629	428 bp downstream
Tssr100630	transcription start site region 100630	410 bp downstream
Tssr107128	transcription start site region 107128	298 bp upstream
Tssr107129	transcription start site region 107129	216 bp upstream
Tssr107130	transcription start site region 107130	199 bp upstream