rs6412916 SNP Detail

Summary

• ID
  rs6412916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:23448273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CACCCCACAT
  CGACTCTGCC CCAAGCCCGG TTACGCCCCC AATATGCCAC ACCTCTGGGC GCCGCCCTCT
  GCAGGCTTCT CCCCCACCCC ACCCCCGACT TCGCCCCGCC TCTCTGCCCT AAGACCCCGC
  CCTATGCCTC CTGGCGCTGT CTTCTGCTAG GCTCCTCCCC GACTTCGCCC CGCCCCCCGG
  TCCTAAGGCT CCGCCCTGGC CCTAGNCCTC CGCTTTGTAA CCCCTGGNTC GCCTTGTTCT
  Y
  GCCGCTGGCT CCTGCTGCCC AGCGAGGCTT CTGGCCAGGG CTTTCTACGA ACGACCGAGA
  CTCCGCCCAG GGCTCGTACC AGAGCGGGTT GTCCATTTTC TGAGGCCCTT GGGATGGGAG
  CTGCGCAGGT CCCTAAGCAG AGGCCCGCGA GGGTTTACTG AAAGAATGCT TTTTTTTTTT
  CCATGCAGTG ATCCTCTAGA GACAAAAGAT CGTGCTTGCA AGTGCCTGGG ATTGTGGATA
  CAGTTACAAT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8819135	WI_WGS_11_23528354	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6412916					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:23448273 () rs orientation: forward

Symbol	Name	Function Class
1700030C12Rik	RIKEN cDNA 1700030C12 gene	within coordinates
Ahsa2	AHA1, activator of heat shock protein ATPase 2	243 bp upstream
Cpgi2649	CpG island 2649	within coordinates
Gm47279	predicted gene, 47279	434 bp upstream
Rr402454	regulatory region 402454	within coordinates
Rr443827	regulatory region 443827	526 bp distal
Rr443828	regulatory region 443828	within coordinates
Tssr100626	transcription start site region 100626	533 bp downstream
Tssr100627	transcription start site region 100627	484 bp downstream
Tssr100628	transcription start site region 100628	466 bp downstream
Tssr100629	transcription start site region 100629	441 bp downstream
Tssr100630	transcription start site region 100630	423 bp downstream
Tssr107128	transcription start site region 107128	311 bp upstream
Tssr107129	transcription start site region 107129	229 bp upstream
Tssr107130	transcription start site region 107130	212 bp upstream