rs6412976 SNP Detail

Summary

• ID
  rs6412976
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGCAGCCAAG
  TGAGGCACTT CGCTGGAGTG GTGGCGCAGC GCTCTCTGCC CGCGGTAGGT GTGTGGCTGC
  GGCGAGCCTT TTCCGGCTCT GGGAGTGTGT GTGTGGAAGG AGAGTCCTCG GGGTGACAGG
  AGTGTTGGGA GTGAAGGGGC GACTTAACTA GCAGGGGATT CTTCTCGCCC GCCCGGAGTC
  TCCTCCCTGT GTTTGGGAGG CAGGCgtggt ggtggtggcg gtggcggtgg CCCCGGCTTG
  K
  CTTTGCTGGT CATTAGAGTC TGGCGCAGGC TTTGCTTTCC TGTCTTAACC CTGATCCCTT
  GGTTTCCGAG AGTTNCTCAG CAGTGTTTGT GGCGCGAAGA TTCCCACCGC CGACCCCTGT
  CATGATTAAA GGAGGCTGGC TGTAGGATTC AACACGGGAA AGCCAGTCGT GGAAGGGAGA
  GGGGGCTGTC TCGACCACTG GCCTCCGGGT CGATAGAGAA CTTTTCTTTT TTGTCAATTG
  CCAGGGGCCA                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8819195	WI_WGS_14_50543797	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6412976					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678664 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	within coordinates
Gm45935	predicted gene, 45935	335 bp upstream
Rr404137	regulatory region 404137	157 bp downstream
Rr493049	regulatory region 493049	351 bp distal
Rr493050	regulatory region 493050	224 bp distal
Rr493051	regulatory region 493051	within coordinates
Setdb2	SET domain, bifurcated 2	335 bp upstream
Tssr125903	transcription start site region 125903	633 bp downstream
Tssr125904	transcription start site region 125904	219 bp downstream
Tssr129008	transcription start site region 129008	328 bp upstream
Tssr129009	transcription start site region 129009	118 bp upstream
Tssr129010	transcription start site region 129010	107 bp upstream
Tssr129011	transcription start site region 129011	87 bp downstream
Tssr129012	transcription start site region 129012	94 bp downstream
Tssr129013	transcription start site region 129013	96 bp downstream