rs6413099 SNP Detail

Summary

• ID
  rs6413099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56927928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAATTTCC TTCTGCAGCT
  AACATAGGCC ATGGTAGATG TATGCTGGTG ACTGCATGAC TTGACCAGGA GGTAAGTGCC
  TCTCAGACTT CTGCCTTCTC AGGAAGCAGG CGAAGGTACC AGTTTGCTCT GGTTGCTACA
  GACTTCCAGA TTTGAATATC ATTACTTCTG TACATTTTGA AAAGGCATGG TCACCAGCAA
  R
  TGTTAGAAAG CAAACCATGA TGCTTCCATG AGAAGTGGAT CTAGACAGGA ATCTCCTGCA
  ATACCCATCC TTAGCAAGAA GCCTCTATCA AATGAAAAGA ACCAGCTAGG CTCAACACTT
  CTGTTTTCTG AGGGTAGAAA GTTAACAAAA TACACTCTCC TTGGTGTTGG TTTTCTGCAC
  ACCATTATAC CTGCCATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8819318	WI_WGS_1_57441857	WI	MOUSE	f	SNP							G		A
ss51252374	NES14269414	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6413099					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51252374	NES14269414	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56927928 () rs orientation: forward

Symbol	Name	Function Class
Gm51624	predicted gene, 51624	within coordinates
Satb2	special AT-rich sequence binding protein 2	within coordinates