rs6413221 SNP Detail

Summary

• ID
  rs6413221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65202048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC GGAGTTTGGG GGCTGGAATG
  R
  GGCCATCTCG CCTCAACTCA GGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8819440	WI_WGS_9_65877238	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6413221					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65202048 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	within coordinates
Cpgi21943	CpG island 21943	within coordinates
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	486 bp downstream
Tssr85679	transcription start site region 85679	597 bp downstream
Tssr85680	transcription start site region 85680	562 bp downstream
Tssr85681	transcription start site region 85681	425 bp downstream
Tssr85682	transcription start site region 85682	391 bp downstream
Tssr85683	transcription start site region 85683	349 bp downstream
Tssr85684	transcription start site region 85684	329 bp downstream
Tssr85685	transcription start site region 85685	322 bp downstream
Tssr85686	transcription start site region 85686	190 bp downstream