rs8236430 SNP Detail

Summary

• ID
  rs8236430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47036768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGAAACA CCAGGCACAG
  GCTTGGAGAA TGCAGACTGT ATTGTTTACT CCGTTTGCCC GACCCCCACA TCTGCACCCA
  AATGCAATAT CTGCATTAGG GGATGGTCTT AGGGTAGGGG CCATTGCCTG AGCATGGGCT
  TCTGGGAGCC GGAGAAACTC AGTCTGTCTT CTTGAGCACA TGGATGAAGT AGCAGGGAAC
  R
  TAGGCCTGGC CAGGCTTGTA GGGCTTGAAG TCACCCAGGA CGCTGTGCTG GCACCTGCCC
  CCAAAGGCTG CTCGCACCAA CTCCGTGAAA GACGCCAAAC AGTGTGGGTA GTAAGAGAGC
  CGGAACTTAC TGCAACAGGG CCCCCAGCCA GATATGAGGG CTGCTGGCCT CAGGTCTCCC
  CACCACCACC ACCTCTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12758128	Gnmt_1_AN4359_5	ROCHEBIO	RPAMM	f	SNP					G	G	G	G		G		A	G				G						G
ss12758134	Gnmt_1_AN4360_5	ROCHEBIO	RPAMM	r	SNP	C									C		T					C		C				C
ss12758145	Gnmt_2_AN4362_5	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G		G	G	A	G				G		G	G			G
ss62757869	NES17350526	PERLEGEN	MM_PANEL2	f	SNP		G		G	G		G		G	G		A	G	G	G	G		G			G	G		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8236430					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62757869	NES17350526	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47036768 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	299 bp downstream
Rr331605	regulatory region 331605	within coordinates
Rr331606	regulatory region 331606	1633 bp proximal
Tssr148377	transcription start site region 148377	472 bp downstream
Tssr148378	transcription start site region 148378	485 bp downstream
Tssr148379	transcription start site region 148379	502 bp downstream
Tssr148380	transcription start site region 148380	867 bp downstream
Tssr148381	transcription start site region 148381	1514 bp downstream