rs8236431 SNP Detail

Summary

• ID
  rs8236431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47036771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACACCA GGCACAGGCT
  TGGAGAATGC AGACTGTATT GTTTACTCCG TTTGCCCGAC CCCCACATCT GCACCCAAAT
  GCAATATCTG CATTAGGGGA TGGTCTTAGG GTAGGGGCCA TTGCCTGAGC ATGGGCTTCT
  GGGAGCCGGA GAAACTCAGT CTGTCTTCTT GAGCACATGG ATGAAGTAGC AGGGAACGTA
  R
  GCCTGGCCAG GCTTGTAGGG CTTGAAGTCA CCCAGGACGC TGTGCTGGCA CCTGCCCCCA
  AAGGCTGCTC GCACCAACTC CGTGAAAGAC GCCAAACAGT GTGGGTAGTA AGAGAGCCGG
  AACTTACTGC AACAGGGCCC CCAGCCAGAT ATGAGGGCTG CTGGCCTCAG GTCTCCCCAC
  CACCACCACC TCTCTCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758129	Gnmt_1_AN4359_6	ROCHEBIO	RPAMM	f	SNP				G	G	G	G			G	G		G				A
ss12758133	Gnmt_1_AN4360_4	ROCHEBIO	RPAMM	r	SNP	C			C	C	C		C		C	C		C	C			T
ss12758146	Gnmt_2_AN4362_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G		G	G	G		A
ss24753298	Gnmt_1_AN4359_7	ROCHEBIO	RPAMM	f	SNP				G	G	G	G			G	G	G	G			G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8236431					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47036771 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	302 bp downstream
Rr331605	regulatory region 331605	within coordinates
Rr331606	regulatory region 331606	1630 bp proximal
Tssr148377	transcription start site region 148377	469 bp downstream
Tssr148378	transcription start site region 148378	482 bp downstream
Tssr148379	transcription start site region 148379	499 bp downstream
Tssr148380	transcription start site region 148380	864 bp downstream
Tssr148381	transcription start site region 148381	1511 bp downstream