rs8236432 SNP Detail

Summary

• ID
  rs8236432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47037132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                   TTTACCATGT GGGCTTTGTT GTTGACTGTC
  AGTACTGACG TCGTAATGTC CTTGGTCAGG TCACTCTGAG GGCATGGGTT GCGTCANNTT
  Y
  CCTNAGCCAC CANGGGGCTT CTGNCCCTCC AGCTCCCGCT TCCCATTGGG GGGCAGCCCA
  ACCTTATAGT AGATGTTCTT CCCCGGGGGC GCACAGCCTG TGCTGAGGAT ATAGTCGTAG
  TTGCGGTGGT CGATCACCAG CAGGCCCCCG GGCCGCACCA TGCTTGCAAT GTTCTTTAGT
  GCCAGCCGGT GCTCGCTCTG GTCACCTGGG TTCCCGGCAG GGCCACAGAC ACCATCTGCT
  TAGGCCTCCA GCACCACCTC CCGCCCCTGT CTCCCTCCCA AGTGCCAGCA CTAAA     
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758137	Gnmt_1_AN4361_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
ss12758151	Gnmt_2_AN4364_4	ROCHEBIO	RPAMM	r	SNP	G	G	G			G	G		G	G	G	G	G	G	A
ss12758163	Gnmt_3_AN4366_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236432					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47037132 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	663 bp downstream
Rr331605	regulatory region 331605	332 bp distal
Rr331606	regulatory region 331606	1269 bp proximal
Rr331607	regulatory region 331607	1869 bp proximal
Tssr148377	transcription start site region 148377	108 bp downstream
Tssr148378	transcription start site region 148378	121 bp downstream
Tssr148379	transcription start site region 148379	138 bp downstream
Tssr148380	transcription start site region 148380	503 bp downstream
Tssr148381	transcription start site region 148381	1150 bp downstream