rs8236433 SNP Detail

Summary

• ID
  rs8236433
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47037136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                              TTTA CCATGTGGGC TTTGTTGTTG ACTGTCAGTA
  CTGACGTCGT AATGTCCTTG GTCAGGTCAC TCTGAGGGCA TGGGTTGCGT CANNTTNCCT
  R
  AGCCACCANG GGGCTTCTGN CCCTCCAGCT CCCGCTTCCC ATTGGGGGGC AGCCCAACCT
  TATAGTAGAT GTTCTTCCCC GGGGGCGCAC AGCCTGTGCT GAGGATATAG TCGTAGTTGC
  GGTGGTCGAT CACCAGCAGG CCCCCGGGCC GCACCATGCT TGCAATGTTC TTTAGTGCCA
  GCCGGTGCTC GCTCTGGTCA CCTGGGTTCC CGGCAGGGCC ACAGACACCA TCTGCTTAGG
  CCTCCAGCAC CACCTCCCGC CCCTGTCTCC CTCCCAAGTG CCAGCACTAA A         
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758138	Gnmt_1_AN4361_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G		G	G	G	G		A
ss12758150	Gnmt_2_AN4364_3	ROCHEBIO	RPAMM	r	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
ss12758164	Gnmt_3_AN4366_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G		G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236433					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47037136 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	667 bp downstream
Rr331605	regulatory region 331605	336 bp distal
Rr331606	regulatory region 331606	1265 bp proximal
Rr331607	regulatory region 331607	1865 bp proximal
Tssr148377	transcription start site region 148377	104 bp downstream
Tssr148378	transcription start site region 148378	117 bp downstream
Tssr148379	transcription start site region 148379	134 bp downstream
Tssr148380	transcription start site region 148380	499 bp downstream
Tssr148381	transcription start site region 148381	1146 bp downstream