rs8236435 SNP Detail

Summary

• ID
  rs8236435
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47037156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCTCTC TCCTGCCAAA
  CCACGTCATA CCTGAAGCCA GGAGAGCCAT CTCTGCCAGT GCCTGGCACC TGCACTGTGT
  AGTCCAGGGT TACCATGTGG GCTTTGTTGT TGACTGTCAG TACTGACGTC GTAATGTCCT
  TGGTCAGGTC ACTCTGAGGG CATGGGTTGC GTCATTCCCT GAGCCACCAC GGGGCTTCTG
  K
  CCCTCCAGCT CCCGCTTCCC ATTGGGGGGC AGCCCAACCT TATAGTAGAT GTTCTTCCCC
  GGGGGCGCAC AGCCTGTGCT GAGGATATAG TCGTAGTTGC GGTGGTCGAT CACCAGCAGG
  CCCCCGGGCC GCACCATGCT TGCAATGTTC TTTAGTGCCA GCCGGTGCTC GCTCTGGTCA
  CCTGGGTTCC CGGCAGGGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758140	Gnmt_1_AN4361_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G
ss12758148	Gnmt_2_AN4364_1	ROCHEBIO	RPAMM	r	SNP	C	C	C			C	C		C	A	C	C	C	C	C
ss12758166	Gnmt_3_AN4366_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236435					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47037156 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	687 bp downstream
Rr331605	regulatory region 331605	356 bp distal
Rr331606	regulatory region 331606	1245 bp proximal
Rr331607	regulatory region 331607	1845 bp proximal
Tssr148377	transcription start site region 148377	84 bp downstream
Tssr148378	transcription start site region 148378	97 bp downstream
Tssr148379	transcription start site region 148379	114 bp downstream
Tssr148380	transcription start site region 148380	479 bp downstream
Tssr148381	transcription start site region 148381	1126 bp downstream