rs8236496 SNP Detail

Summary

• ID
  rs8236496
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164676692 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TCTCTGGGGA AACGGGGAAT
  GGGGCAGGTG GTCAGGCAAC AGACTCACCT CTGTGTCATT GGTCACGTAC ATCTTGTCAT
  CCGAGTAGGA GAAGCCCACC CCAGCTGGGG ACTCGATATA CAGCACGTTG GCAATCTAGG
  GGGAGGAGGG AATGAGCAGA AGAGGGGGTC CCCAACCCTT CAAGTACCCA GACATCCCTA
  W
  GAGACCCACA GCTCCAGGAG TACCAGGTTC CAAGCATAGG GGTTGTACTC CAGGGTGACA
  CCATCTGGCT GGATCTGGGG AGGAAAGACA GAGAGGCCTG TGAGGGTGCC GGTTAGCAGC
  TGGGTGGAGA GAAAGAGCCA CAGTGCGTTT CCGTATTCTC ACACTCCATG AGAGGTACGG
  AAAGTTAGGG CAAGGGCCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766843	Ppgb_JC7732_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A		A	T
ss12766858	Ppgb_JC7734_5	ROCHEBIO	RPAMM	f	SNP	A	A				A	A		A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236496					SNP	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164676692 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	355 bp distal
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	1316 bp upstream
Rr367364	regulatory region 367364	901 bp downstream
Tssr21656	transcription start site region 21656	1894 bp downstream
Tssr21657	transcription start site region 21657	1837 bp downstream
Tssr21658	transcription start site region 21658	1802 bp downstream
Tssr21659	transcription start site region 21659	997 bp downstream
Tssr21660	transcription start site region 21660	960 bp downstream
Tssr21661	transcription start site region 21661	920 bp downstream
Tssr21662	transcription start site region 21662	724 bp downstream
Tssr21663	transcription start site region 21663	675 bp downstream
Tssr21664	transcription start site region 21664	634 bp downstream
Tssr21665	transcription start site region 21665	91 bp upstream
Tssr21666	transcription start site region 21666	402 bp upstream
Tssr21667	transcription start site region 21667	455 bp upstream
Tssr21668	transcription start site region 21668	857 bp upstream
Tssr21669	transcription start site region 21669	909 bp upstream
Tssr21670	transcription start site region 21670	1639 bp upstream
Tssr27546	transcription start site region 27546	1292 bp upstream