rs8236498 SNP Detail

Summary

• ID
  rs8236498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164676935 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTTT ACCAGAGCAC ATGACAGGGC
  Y
  CAAAGTGGAC TCTGAGGCCA TGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766852	Ppgb_JC7733_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T		T	C
ss12766856	Ppgb_JC7734_3	ROCHEBIO	RPAMM	f	SNP	T	T				T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236498					SNP	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164676935 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	598 bp distal
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	1559 bp upstream
Rr367364	regulatory region 367364	1144 bp downstream
Tssr21659	transcription start site region 21659	1240 bp downstream
Tssr21660	transcription start site region 21660	1203 bp downstream
Tssr21661	transcription start site region 21661	1163 bp downstream
Tssr21662	transcription start site region 21662	967 bp downstream
Tssr21663	transcription start site region 21663	918 bp downstream
Tssr21664	transcription start site region 21664	877 bp downstream
Tssr21665	transcription start site region 21665	131 bp downstream
Tssr21666	transcription start site region 21666	159 bp upstream
Tssr21667	transcription start site region 21667	212 bp upstream
Tssr21668	transcription start site region 21668	614 bp upstream
Tssr21669	transcription start site region 21669	666 bp upstream
Tssr21670	transcription start site region 21670	1396 bp upstream
Tssr21671	transcription start site region 21671	1985 bp upstream
Tssr27546	transcription start site region 27546	1535 bp upstream