rs8236500 SNP Detail

Summary

• ID
  rs8236500
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164677056 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTTCCCTCAG GTAGCTGCCC
  TGCACCTGAA GATTCATGCT AGGATCCTGC ATGACCAGTA CAGCCAAGGT GGGGATGTAG
  ATGCCAGCAT AGCTCTCTCC TGTCAGGAAA AGTTTGTTGT CCTTGTATTC CGGAAAGAGG
  CGGAAGAAGT CTTTAAGGGC TTCATAATTG TTCTCCGCCA CCTGAGGATG CCAAGATGGA
  W
  GAGTCAGGAG ACCCGAGGAC GTTTAAGTTA GAAAGCGCTT CAGAGATAAT GAGTTCAACC
  CATTTTATTT TGTATAAGAG GAAGTGGACT GGTTGAGTTT ACCAGAGCAC ATGACAGGGC
  TCAAAGTGGA CTCTGAGGCC ATGCTCTCCT CCTAATCAAG CCATCTCTGG GGAAACGGGG
  AATGGGGCAG GTGGTCAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766850	Ppgb_JC7733_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A		A	T
ss12766854	Ppgb_JC7734_1	ROCHEBIO	RPAMM	f	SNP	A	A				A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236500					SNP	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164677056 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	719 bp distal
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	1680 bp upstream
Rr367364	regulatory region 367364	1265 bp downstream
Rr569730	regulatory region 569730	1190 bp distal
Tssr21659	transcription start site region 21659	1361 bp downstream
Tssr21660	transcription start site region 21660	1324 bp downstream
Tssr21661	transcription start site region 21661	1284 bp downstream
Tssr21662	transcription start site region 21662	1088 bp downstream
Tssr21663	transcription start site region 21663	1039 bp downstream
Tssr21664	transcription start site region 21664	998 bp downstream
Tssr21665	transcription start site region 21665	252 bp downstream
Tssr21666	transcription start site region 21666	38 bp upstream
Tssr21667	transcription start site region 21667	91 bp upstream
Tssr21668	transcription start site region 21668	493 bp upstream
Tssr21669	transcription start site region 21669	545 bp upstream
Tssr21670	transcription start site region 21670	1275 bp upstream
Tssr21671	transcription start site region 21671	1864 bp upstream
Tssr27546	transcription start site region 27546	1656 bp upstream