rs8236501 SNP Detail

Summary

• ID
  rs8236501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164677649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTACTCAG CTTCTAGATT
  GCAGGTCTGG GTTGTAGGTC AAGGGAGGCT CCCCCTCGCT CTCGCCCTTC GGATGAGCCG
  AGCATGCTTC GTGTTTCGCA GGGGCTGGCT GTGGGCAATG GACTTGCCTC CTATGAGCAG
  AACGACAACT CCCTGGTCTA CTTTGCCTAC TACCATGGCC TTCTGGGGAA CAGGTAAAGG
  R
  AGAGGGACCG TTGGGCAATG TCTAAGGCGG GGCAGGTCAT ACGATCTCAG CACAGGATTC
  CCACTCTGGT TTATGTGTAG GCCGGAGCTG GAATTGACCA AAGGGCTTGA TGCTTTAAAG
  GCCAAGCCTA GGGTTTAAAG AAACTAAGGC AGCTAGACAT GGTGATACAC ACCTGTAACC
  TGGCACTTGA AAACGGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766823	Ppgb_JC7726_1	ROCHEBIO	RPAMM	f	SNP		A	G	A
ss12766861	Ppgb_JC7735_3	ROCHEBIO	RPAMM	r	SNP	T				T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236501					SNP	A	A	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164677649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1312 bp distal
Ctsa	cathepsin A	within coordinates
Rr367364	regulatory region 367364	1858 bp downstream
Tssr21659	transcription start site region 21659	1954 bp downstream
Tssr21660	transcription start site region 21660	1917 bp downstream
Tssr21661	transcription start site region 21661	1877 bp downstream
Tssr21662	transcription start site region 21662	1681 bp downstream
Tssr21663	transcription start site region 21663	1632 bp downstream
Tssr21664	transcription start site region 21664	1591 bp downstream
Tssr21665	transcription start site region 21665	845 bp downstream
Tssr21666	transcription start site region 21666	530 bp downstream
Tssr21667	transcription start site region 21667	449 bp downstream
Tssr21668	transcription start site region 21668	78 bp downstream
Tssr21669	transcription start site region 21669	37 bp downstream
Tssr21670	transcription start site region 21670	682 bp upstream
Tssr21671	transcription start site region 21671	1271 bp upstream
Tssr21672	transcription start site region 21672	1472 bp upstream
Tssr21673	transcription start site region 21673	1639 bp upstream
Tssr27547	transcription start site region 27547	1674 bp downstream
Tssr27548	transcription start site region 27548	1724 bp downstream